../../tmp/servers/virsirnadb/117839150
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1257 | 1 | gcaaatcagctaaagcaat | 19 | |
| AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 6182 | ................... | 6200 | 100 |
| AY790926.1 | Human coxsackievirus A16 strain shzh00-1, complete genome | 6182 | ................... | 6200 | 100 |
| EU262658.1 | Human coxsackievirus A16 strain shzh05-1, complete genome | 6182 | ................... | 6200 | 100 |
| FJ198212.1 | Human coxsackievirus A16 strain GZ08, complete genome | 6182 | ................... | 6200 | 100 |
| GQ279371.1 | Human coxsackievirus A16 strain SZ/HK08-7, complete genome | 6182 | .....c............. | 6200 | 94 |
| HQ269389.1 | Human coxsackievirus A16 isolate XM-CA16-3560, complete genome | 6183 | .....c............. | 6201 | 94 |
| U22521.1 | ETU22521 Human enterovirus 71 polyprotein gene, complete cds | 6180 | ...........g......_ | 6197 | 89 |
| U22522.1 | ETU22522 Human enterovirus 71 polyprotein gene, complete cds | 6183 | ...........t......_ | 6200 | 89 |
| AB204852.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR | 6180 | ...........g......_ | 6197 | 89 |
| AB204853.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts | 6180 | ...........g......_ | 6197 | 89 |
| GQ994989.1 | Human enterovirus 71 strain Chongqing1-09-China, complete genome | 6180 | .........t........_ | 6197 | 89 |
| GU434678.1 | Human enterovirus 71 strain EV71-Hubei-09-China, complete genome | 6180 | ...........g......_ | 6197 | 89 |
| AB575923.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 202 | 6126 | ...........t......_ | 6143 | 89 |
| AB575927.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 113 | 6119 | ...........t......_ | 6136 | 89 |
| AB575928.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 115 | 6120 | ...........t......_ | 6137 | 89 |
| AY421761.1 | Human coxsackievirus A3 strain Olson, complete genome | 6167 | ...........g..a.... | 6185 | 89 |
| AY421761.1 | Human coxsackievirus A3 strain Olson, complete genome | 4205 | ___...a.c........._ | 4219 | 68 |
| GQ279368.1 | Human coxsackievirus A16 strain SZ/HK08-3, complete genome | 6182 | .....c...t......... | 6200 | 89 |
| HQ423141.1 | Human coxsackievirus A16 strain KMM/08, complete genome | 6182 | .....c...t......... | 6200 | 89 |
| EF667344.1 | Human enterovirus 92 strain RJG7, complete genome | 6134 | _..........g......_ | 6150 | 84 |
| AY421764.1 | Human coxsackievirus A6 strain Gdula, complete genome | 6206 | ...........g..a..._ | 6223 | 84 |
| AY421768.1 | Human coxsackievirus A12 strain Texas-12, complete genome | 6176 | ...........g..a..._ | 6193 | 84 |
| EU812514.1 | Human coxsackievirus A16 strain FY18 from China, complete genome | 6188 | .........t.g......_ | 6205 | 84 |
| FJ607338.1 | Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c | 6178 | .....c..a........._ | 6195 | 84 |
| GQ892830.1 | Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome | 6179 | .....c..a........._ | 6196 | 84 |
| GQ994990.1 | Human enterovirus 71 strain Chongqing2-09-China, complete genome | 6179 | .....c..a........._ | 6196 | 84 |
| HQ400942.1 | Human enterovirus 71 HZ08/Hangzhou/2008, complete genome | 6179 | .....c..a........._ | 6196 | 84 |
| HQ456310.1 | Human enterovirus A strain GZ08-530, complete genome | 6179 | .....c..a........._ | 6196 | 84 |
| HQ456311.1 | Human enterovirus A strain GZ08-522, complete genome | 6179 | .....c..a........._ | 6196 | 84 |
| HQ456312.1 | Human enterovirus A strain GZ08-520, complete genome | 6179 | .....c..a........._ | 6196 | 84 |
| FJ360545.1 | Human enterovirus 71 isolate GZ-08-02, complete genome | 6179 | .....c..at......... | 6197 | 84 |
| FJ828519.1 | Human enterovirus 71 isolate BJ08, complete genome | 6158 | .....c..at......... | 6176 | 84 |
| AB575939.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 365 | 4149 | __....a.t........._ | 4164 | 73 |
| AF499637.1 | Human coxsackievirus A13 strain Flores, complete genome | 4176 | ....cg.........g.c. | 4194 | 78 |
| AF465511.1 | Human coxsackievirus A13 strain Flores, complete genome | 4176 | ....cg.........g.c. | 4194 | 78 |
| AF162711.1 | Echovirus 30 strain Bastianni, complete genome | 733 | _...c.........ag.._ | 749 | 73 |
| AF311938.1 | Human echovirus 30 strain Bastianni, complete genome | 738 | _...c.........ag.._ | 754 | 73 |
| DQ341354.1 | Human enterovirus 71 isolate 3799-SIN-98, complete genome | 6184 | .........t.g..a..__ | 6200 | 73 |
| DQ341367.1 | Human enterovirus 71 isolate MY821-3-SAR-97, complete genome | 6183 | .........t.g..a..__ | 6199 | 73 |
| DQ341368.1 | Human enterovirus 71 isolate MY104-9-SAR-97, complete genome | 6183 | .........t.g..a..__ | 6199 | 73 |
| AM396586.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 6183 | .........t.g..a..__ | 6199 | 73 |
| AM396588.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 6174 | .........t.g..a..__ | 6190 | 73 |
| EU364841.1 | Human enterovirus 71 strain 26M/AUS/4/99, complete genome | 6184 | .........t.g..a..__ | 6200 | 73 |
| EU376004.1 | Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome | 6184 | .........t.g..a..__ | 6200 | 73 |
| EU376005.1 | Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome | 6184 | .........t.g..a..__ | 6200 | 73 |
| AB469182.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E | 6182 | .........t.g..a..__ | 6198 | 73 |
| AB469183.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71 | 6917 | .........t.g..a..__ | 6933 | 73 |
| AB550334.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o | 6182 | .........t.g..a..__ | 6198 | 73 |
| AB550335.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L | 6182 | .........t.g..a..__ | 6198 | 73 |
| AF499636.1 | Human coxsackievirus A11 strain Belgium-1, complete genome | 4171 | ....cg.........____ | 4185 | 68 |
| AF546702.1 | Human coxsackievirus A21 strain Kuykendall, complete genome | 4123 | ....tg.........____ | 4137 | 68 |
| AF465515.1 | Human coxsackievirus A21 strain Kuykendall, complete genome | 4123 | ....tg.........____ | 4137 | 68 |
| AB205395.1 | Human enterovirus C genomic RNA, complete genome, strain: Cambodia-02 | 4149 | ....tg.........____ | 4163 | 68 |
| V01148.1 | Genome of human poliovirus type 1 (Mahoney strain). (One of two versi | 7052 | _...........c._____ | 7064 | 63 |
| V01150.1 | Human poliovirus strain Sabin 1 complete genome, strain Sabin 1 | 7060 | _...........t._____ | 7072 | 63 |
| AJ132960.1 | Human poliovirus 1, complete genome. Isolated from faeces of immunode | 7061 | _...........c._____ | 7073 | 63 |
| AJ416942.1 | Human poliovirus 1 genomic RNA for polyprotein, strain CHAT 10A-11 | 7060 | _...........c._____ | 7072 | 63 |
| AF462418.1 | Human poliovirus 1 99/056-252-14, complete genome | 7060 | _...........t._____ | 7072 | 63 |
| AF462419.1 | Human poliovirus 1 RUS-1161-96-001, complete genome | 7060 | _...........t._____ | 7072 | 63 |
| AJ430385.1 | Human poliovirus 1 genomic RNA for polyprotein gene, strain Cox | 7060 | _...........c._____ | 7072 | 63 |
| AY184219.1 | Human poliovirus 1 strain Sabin 1, complete genome | 7060 | _...........t._____ | 7072 | 63 |
| AY278550.1 | Human poliovirus 2 isolate P2S/Mog65-1 (20003), complete genome | 7059 | _...........t._____ | 7071 | 63 |
| AY278552.1 | Human poliovirus 2 isolate P2S/Mog65-2 (20077), complete genome | 7059 | _...........t._____ | 7071 | 63 |
| AF538840.1 | Human poliovirus 1 isolate TCDCE01-135, complete genome | 7030 | _...........c._____ | 7042 | 63 |
| AF538841.1 | Human poliovirus 1 isolate TCDC01-113, complete genome | 7060 | _...........c._____ | 7072 | 63 |
| AM040036.1 | Human poliovirus 2 complete virion genome, isolate PV2/5021-1/ISR99 | 6963 | _...........c._____ | 6975 | 63 |
| EF015886.1 | Human enterovirus 96 strain BAN00-10488, complete genome | 3369 | .a...........______ | 3381 | 63 |
| EF682343.1 | Human poliovirus 1 strain USA10774 polyprotein gene, complete cds | 7034 | _...........t._____ | 7046 | 63 |
| EF682344.1 | Human poliovirus 1 strain USA10775 polyprotein gene, complete cds | 7034 | _...........t._____ | 7046 | 63 |
| EF682345.1 | Human poliovirus 1 strain USA10773 polyprotein gene, complete cds | 7034 | _...........t._____ | 7046 | 63 |
| EF682346.1 | Human poliovirus 1 strain USA10780 polyprotein gene, complete cds | 7034 | _...........t._____ | 7046 | 63 |
| EF682347.1 | Human poliovirus 1 strain USA10781 polyprotein gene, complete cds | 7034 | _...........t._____ | 7046 | 63 |
| EF682348.1 | Human poliovirus 1 strain USA10782 polyprotein gene, complete cds | 7034 | _...........t._____ | 7046 | 63 |
| EF682349.1 | Human poliovirus 1 strain USA10771 polyprotein gene, complete cds | 7034 | _...........t._____ | 7046 | 63 |
| EF682350.1 | Human poliovirus 1 strain USA10772 polyprotein gene, complete cds | 7034 | _...........t._____ | 7046 | 63 |
| EF682351.1 | Human poliovirus 1 strain USA10778 polyprotein gene, complete cds | 7034 | _...........t._____ | 7046 | 63 |
| EF682352.1 | Human poliovirus 1 strain USA10770 polyprotein gene, complete cds | 7034 | _...........t._____ | 7046 | 63 |
| EF682353.1 | Human poliovirus 1 strain USA10777 polyprotein gene, complete cds | 7034 | _...........t._____ | 7046 | 63 |
| EF682354.1 | Human poliovirus 1 strain USA10779 polyprotein gene, complete cds | 7034 | _...........t._____ | 7046 | 63 |
| EF682356.1 | Human poliovirus 1 strain USA10784, complete genome | 7060 | _...........c._____ | 7072 | 63 |
| EF682357.1 | Human poliovirus 1 strain USA10785, complete genome | 7060 | _...........t._____ | 7072 | 63 |
| EF682358.1 | Human poliovirus 1 strain USA10783, complete genome | 7060 | _...........t._____ | 7072 | 63 |
| EU794953.1 | Human poliovirus 1 isolate A21 polyprotein gene, complete cds | 7012 | _...........t._____ | 7024 | 63 |
| EU794954.1 | Human poliovirus 1 isolate A49 polyprotein gene, complete cds | 7012 | _...........t._____ | 7024 | 63 |
| EU794955.1 | Human poliovirus 1 isolate A63 polyprotein gene, complete cds | 7012 | _...........t._____ | 7024 | 63 |
| EU794956.1 | Human poliovirus 1 isolate A84 polyprotein gene, complete cds | 7012 | _...........t._____ | 7024 | 63 |
| EU794957.1 | Human poliovirus 1 isolate A88 polyprotein gene, complete cds | 7012 | _...........t._____ | 7024 | 63 |
| EU794958.1 | Human poliovirus 1 isolate A91 polyprotein gene, complete cds | 7012 | _...........t._____ | 7024 | 63 |
| EU794959.1 | Human poliovirus 1 isolate A102 polyprotein gene, complete cds | 7012 | _...........t._____ | 7024 | 63 |
| EU794960.1 | Human poliovirus 1 isolate A105 polyprotein gene, complete cds | 7012 | _...........t._____ | 7024 | 63 |
| EU794961.1 | Human poliovirus 1 isolate A118 polyprotein gene, complete cds | 7012 | _...........t._____ | 7024 | 63 |
| EU794962.1 | Human poliovirus 1 isolate A199 polyprotein gene, complete cds | 7012 | _...........t._____ | 7024 | 63 |
| EU794963.1 | Human poliovirus 1 isolate A449 polyprotein gene, complete cds | 7012 | _...........t._____ | 7024 | 63 |
| EU794964.1 | Human poliovirus 1 isolate A649 polyprotein gene, complete cds | 7012 | _...........c._____ | 7024 | 63 |
| FJ769378.1 | Human poliovirus 1 strain CHN8184/GZ/CHN/2004, complete genome | 7060 | _...........c._____ | 7072 | 63 |
| FJ769379.1 | Human poliovirus 1 strain CHN8229-1/GZ/CHN/2004, complete genome | 7060 | _...........c._____ | 7072 | 63 |
| FJ769380.1 | Human poliovirus 1 strain CHN8229-2/GZ/CHN/2004, complete genome | 7060 | _...........c._____ | 7072 | 63 |
| FJ769381.1 | Human poliovirus 1 strain CHN8229-3/GZ/CHN/2004, complete genome | 7060 | _...........c._____ | 7072 | 63 |
| FJ769382.1 | Human poliovirus 1 strain CHN8233c/GZ/CHN/2004, complete genome | 7060 | _...........c._____ | 7072 | 63 |
| FJ769383.1 | Human poliovirus 1 strain CHN8225c/GZ/CHN/2004, complete genome | 7060 | _...........c._____ | 7072 | 63 |
| FJ769384.1 | Human poliovirus 1 strain CHN8248c/GZ/CHN/2004, complete genome | 7060 | _...........c._____ | 7072 | 63 |
| FJ769385.1 | Human poliovirus 1 strain CHN8264c/GZ/CHN/2004, complete genome | 7060 | _...........c._____ | 7072 | 63 |
| AF111961.2 | Human poliovirus 1 isolate CHN-Guangdong/92-2, complete genome | 7064 | _..........._______ | 7074 | 57 |
| AJ544513.1 | Human poliovirus 2 gene for polyprotein, genomic RNA, isolate 102050 | 7059 | _..........._______ | 7069 | 57 |
| AY876912.1 | Human enterovirus Ningbo3-02, complete genome | 7078 | _..........._______ | 7088 | 57 |
| AY302546.1 | Human echovirus 20 strain JV-1 complete genome | 2908 | _..........._______ | 2918 | 57 |
| AY896763.1 | Human enterovirus B strain CBV3-18219-02 from Moldova polyprotein gen | 4164 | ________........... | 4174 | 57 |
| AB575911.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100 | 7280 | _____...........___ | 7270 | 57 |
| AB575912.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 108 | 7294 | _____...........___ | 7284 | 57 |